PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.09G154300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 561aa    MW: 64196 Da    PI: 8.261
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.09G154300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.62.5e-1691147263
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykk 63 
                          W+++evlaL+++r++me+++ +       We+vs+k+ e gf+rs+++Ckek+e+ n+++ +
  Manes.09G154300.1.p  91 WSNDEVLALLRIRSSMENWFPEF-----TWEHVSRKLGELGFKRSAQKCKEKFEEENRYFNN 147
                          ********************998.....9******************************976 PP

2trihelix96.62.2e-30437523186
             trihelix   1 rWtkqevlaLiearremeerlr..rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          rW+k+evlaLi++r++   + +  ++  k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql 
  Manes.09G154300.1.p 437 RWPKDEVLALINLRSSFYGSNEdkEATVKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SVDSRTCPYFHQLS 523
                          8**************7655555216789********************************************8.78889*******95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.287144IPR001005SANT/Myb domain
PfamPF138371.3E-1089151No hitNo description
PROSITE profilePS500906.2690142IPR017877Myb-like domain
CDDcd122032.19E-1391146No hitNo description
SMARTSM007170.006434498IPR001005SANT/Myb domain
CDDcd122031.94E-23436503No hitNo description
PfamPF138378.8E-20436523No hitNo description
PROSITE profilePS500906.969437496IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MFEGVPDQFH QFTVSRTSLP LPLSFPSLHG SSASFDLYTS HHQHLPLQQP TFLQQTAPST  60
SKNQDKQENC MVVVNLESER ERSMHESIDP WSNDEVLALL RIRSSMENWF PEFTWEHVSR  120
KLGELGFKRS AQKCKEKFEE ENRYFNNNIN YSKNYKVFGE IEELYRDDNH NSQGIALGKN  180
KTMDKAAEEE GKMEQNVEED SRIDQTVGNL DGENGKWVDK SKSKKRKRQQ KFEMFMGFCE  240
DIISKIMAQQ EEMHNKLLED MVKRDEEKLA REEAWKKQEM DKINKELELR AQAQALTGDR  300
QATIVNFLKK FSPSTASCVQ ILGETSVQDL LKRPNNSNPS TSSSLVLPQN PNNKQSKSEA  360
PMSTMIDFGH QNLSSLPENL APQNPSSTLV RSSSTSSSQC PQTKTPSYPN SQSNRLQTVT  420
VQRKPASNGK AEDLGKRWPK DEVLALINLR SSFYGSNEDK EATVKAPLWE RISQGMLELG  480
YKRSAKRCKE KWENINKYFR KTKDVNKKRS VDSRTCPYFH QLSTLYNQGT LGVPHSELPE  540
KLPLAASSLE KPPYLEQANY *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002512226.10.0PREDICTED: trihelix transcription factor GTL2
TrEMBLB9REQ70.0B9REQ7_RICCO; Transcription factor, putative
STRINGPOPTR_0013s03670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-100Trihelix family protein